Tandy Warnow

Founder Professor of Engineering
Professor of the Departments of Computer Science and Bioengineering
Institute for Genomic Biology, Biocomplexity Theme
National Center for Supercomputing Applications
Affiliate in the departments of Electrical and Computer Engineering, Mathematics, Statistics, Animal Biology, Entomology, and Plant Biology
PhD (Mathematics) University of California at Berkeley, 1991
B.S. (Mathematics) University of California at Berkeley, 1984

Fellow of the ISCB (International Society for Computational Biology), 2017

Fellow of the ACM (Association for Computing Machinery), 2016: For contributions to mathematical theory, algorithms, and software for large-scale molecular phylogenetics and historical linguistics

My former student Siavash Mirarab received honorable mention for ACM Doctoral Dissertation Award, 2016 (UCSD announcement) (ACM announcement), and selected as a Sloan Foundation Fellow in Computational and Evolutionary Molecular Biology 2017.

Festschrift to honor Professor Bernard M.E. Moret

Research Positions Available: If you are an undergraduate seeking a research position, please see this page. I have openings in my group for graduate students (PhD or MS) to work on developing computational methods for large-scale multiple sequence alignment, phylogeny estimation, metagenomics, and even historical linguistics. Strong programming skills, mathematical intuition, and interest in collaboration are necessary. If you are already a graduate student at UIUC, please contact me directly. If you are interested in applying to UIUC for graduate school and would like to work with me, please read this first and then contact me. Unfortunately, I do not have any funding available for postdoctoral researchers. However, if you have your own source of funds and have published papers directly related to my research, I'll be glad to talk with you about working together.

Research Overview: My research combines mathematics, computer science, probability, and statistics, in order to develop algorithms with improved accuracy for large-scale and complex estimation problems in phylogenomics (genome-scale phylogeny estimation), multiple sequence alignment, metagenomics, and historical linguistics. Click here for more about my research.

News Articles

Computational Phylogenetics: An introduction to designing methods for phylogeny estimation, to be published by Cambridge University Press in 2017.

Teaching Spring 2017

CS 581/BIOE 540 Algorithmic Computational Genomics. TuTh 11-12:20 in 1109 SC.
CS 466: Introduction to Bioinformatics MWF 8-8:50 AM in 1304 SC. See also BIOE 498.

Office hours Spring 2017: Mondays 9-10 AM (CS 466/BIOE 498) and Tuesdays 12:30-1:30 PM (BIOE 540/CS 581), both in 3235 Siebel Center.

Current NSF Funding: My research in currently funded by three grants from the National Science Foundation.

Multiple sequence alignment, funded by NSF grant ABI-1458652, beginning August 2015. This project will develop new methods for multiple sequence alignment, building on our SATé, PASTA, and UPP methods.
Metagenomics, funded by NSF grant III:AF:1513629. This is a collaborative grant with the University of Maryland, for new methods for metagenomic dataset analysis, building on our TIPP method for taxon identification of reads in a metagenomic sample.
Graph-Theoretic Algorithms to Improve Phylogenomic Analyses, funded by NSF grant CCF-1535977. I am the overall PI, and this project is collaborative with Satish Rao (UC Berkeley PI) and Chandra Chekuri (UIUC). We are developing new theoretical computer science and discrete algorithms for improving the estimation of large species and gene trees, and specifically enabling statistical methods to scale to ultra-large datasets.

Recent NSF funding has supported work in phylogenomics, described here. This is still an area of very active research in my group. I also recently benefited from support of the John P. Simon Guggenheim Foundation, and earlier support from the David and Lucile Packard Foundation, the Radcliffe Institute for Advanced Study at Harvard University, the Program for Evolutionary Dynamics at Harvard University, and Microsoft Research, New England. The Founder Professorship is funded through the Grainger Engineering Breakthroughs Initiative, which is supporting development of research in Big Data and Bioengineering at UIUC. I am grateful to the National Science Foundation for its continuous support since 1994. See this page for completed projects funded by NSF, starting in 2001.

A day in the life of an SRO at NIH (not by me)

"Plus de détails, plus de détails, disait-il à son fils, il n'y a d'originalité et de vérité que dans les détails..." -- Stendhal, Lucien Leuwen (a quote much loved by my stepfather, Martin J. Klein, and an essential guide for all scholarship).

Click here for Google Scholar Citations (i10-index 134 and h-index 55).

For prospective students and postdocs Current and former students and postdocs Prior courses: CS 173(b), CS 598AGB, 2016 and CS 598AGB, 2015 Recent Symposia and Software Schools CIPRES Personal Conference Calendar

Downloadable papers Complete vita and publication list Software Former lab website How to write your first paper Mihai Pop's Writing Checklist Seminar Talks (2015-present) Radcliffe Exploratory Seminar 2017

Contact info